Last update: Sep 2005
Application 1. Pathway Analysis
- Refine KEGG pathway using protein-protein contrasts
Enter a
KEGG
pathway ID
(only for pathways of Homo Sapiens)
Select KEGG ID by organism:
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Inositol metabolism
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Ascorbate and aldarate metabolism
Fatty acid biosynthesis (path 1)
Fatty acid biosynthesis (path 2)
Fatty acid metabolism
Synthesis and degradation of ketone bodi...
Biosynthesis of steroids
Bile acid biosynthesis
Ubiquinone biosynthesis
C21-Steroid hormone metabolism
Androgen and estrogen metabolism
Oxidative phosphorylation
ATP synthesis
Urea cycle and metabolism of amino group...
Purine metabolism
Pyrimidine metabolism
Glutamate metabolism
Alanine and aspartate metabolism
Glycine, serine and threonine metabolism
Methionine metabolism
Cysteine metabolism
Valine, leucine and isoleucine degradati...
Valine, leucine and isoleucine biosynthe...
Lysine biosynthesis
Lysine degradation
Arginine and proline metabolism
Histidine metabolism
Tyrosine metabolism
1,1,1-Trichloro-2,2-bis(4-chlorophenyl)e...
Phenylalanine metabolism
gamma-Hexachlorocyclohexane degradation
Benzoate degradation via hydroxylation
Bisphenol A degradation
Tryptophan metabolism
Phenylalanine, tyrosine and tryptophan b...
Novobiocin biosynthesis
beta-Alanine metabolism
Taurine and hypotaurine metabolism
Aminophosphonate metabolism
Selenoamino acid metabolism
Cyanoamino acid metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
Glutathione metabolism
Starch and sucrose metabolism
N-Glycan biosynthesis
N-Glycan degradation
O-Glycan biosynthesis
High-mannose type N-glycan biosynthesis
Nucleotide sugars metabolism
Streptomycin biosynthesis
Aminosugars metabolism
Glycosaminoglycan degradation
Chondroitin / Heparan sulfate biosynthes...
Keratan sulfate biosynthesis
Peptidoglycan biosynthesis
Glycerolipid metabolism
Inositol phosphate metabolism
Glycosylphosphatidylinositol(GPI)-anchor...
Glycerophospholipid metabolism
Prostaglandin and leukotriene metabolism
Glycosphingolipid metabolism
Blood group glycolipid biosynthesis-lact...
Blood group glycolipid biosynthesis-neol...
Globoside metabolism
Ganglioside biosynthesis
Pyruvate metabolism
2,4-Dichlorobenzoate degradation
1- and 2-Methylnaphthalene degradation
Tetrachloroethene degradation
Nitrobenzene degradation
1,4-Dichlorobenzene degradation
Fluorene degradation
Carbazole degradation
Glyoxylate and dicarboxylate metabolism
Benzoate degradation via CoA ligation
Propanoate metabolism
Ethylbenzene degradation
Styrene degradation
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Carbon fixation
Reductive carboxylate cycle (CO2 fixatio...
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Atrazine degradation
Retinol metabolism
Porphyrin and chlorophyll metabolism
Terpenoid biosynthesis
Monoterpenoid biosynthesis
Limonene and pinene degradation
Diterpenoid biosynthesis
Nitrogen metabolism
Sulfur metabolism
Caprolactam degradation
Stilbene, coumarine and lignin biosynthe...
Alkaloid biosynthesis I
Alkaloid biosynthesis II
Aminoacyl-tRNA biosynthesis
Neurodegenerative Disorders
Ribosome
RNA polymerase
Basal transcription factors
DNA polymerase
Proteasome
Protein export
MAPK signaling pathway
Calcium signaling pathway
Cytokine-cytokine receptor interaction
Phosphatidylinositol signaling system
Neuroactive ligand-receptor interaction
Cell cycle
Ubiquitin mediated proteolysis
Apoptosis
Wnt signaling pathway
Notch signaling pathway
Hedgehog signaling pathway
TGF-beta signaling pathway
Focal adhesion
ECM-receptor interaction
Adherens junction
Tight junction
Complement and coagulation cascades
Toll-like receptor signaling pathway
Jak-STAT signaling pathway
Circadian rhythm
Regulation of actin cytoskeleton
Insulin signaling pathway
Alzheimer's disease
Parkinson's disease
Amyotrophic lateral sclerosis (ALS)
Huntington's disease
Dentatorubropallidoluysian atrophy (DRPL...
Prion disease
Cholera - Infection
Application 2. Domain Analysis
- Infer domain-domain contrasts from protein-protein contrasts
(FAQ: What is a domain-domain contrast?)
Enter an
InterPro
ID
Search for InterPro ID by name:
Application 3. Ontology Analysis
- Discover difference/similarity of proteins within a Gene Ontology concept
Enter a
Gene Ontology
code
Search for GO ID by name:
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I2R
&
KAIST
NLP & CL Lab
Korea Advanced Institute of Science and Technology (KAIST), South Korea
Knowledge Discovery Department
Institute for Infocomm Research(I2R), Singapore